Maize Genetics, Genomics, and Bioinformatics Workshop
March 7-11, 2004; CIMMYT, Mexico

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Workshop Materials

Final Report on the workshop is now available.


Students

Instructors

Contact Information for Students & Instructors

Lecture Notes

Maize Development - Leaves & Leaf-Like Organs (Sarah Hake) (.pdf)
Maize Development - The Plant & Its Parts (David Jackson) (.pdf)
Forward Genetics (Bob Schmidt) (.ppt)
Reverse Genetics (Bob Schmidt) (.ppt)
Mutant Analysis (Becky Boston) (.ppt)
Transposable Elements and Their Uses (Hugo Dooner), part one (.pdf) and part two (.pdf)
Maize Transposable Elements Disrupt Plant Genes (Jean-Philippe Vielle-Calzada) (.ppt)
Meiosis, Recombination, and Mapping (Lisa Harper) (.ppt)
QTLs, Part One (Torbert Rocheford) (.ppt)
QTLs, Part Two (Ed Buckler) (.ppt)
Ontologies (Susan McCouch) (.ppt)
Developmental Regulation of MuDR/Mu Transposons (Virginia Walbot) (.ppt)
Comparative Map Views (Doreen Ware) (.ppt)
Microscopy Exercise (Toby Kellogg) (.doc)
The presentation by Anne Sylvester was in the form of hands-on computer exercises.

Exercises

Bioinformatics Tools Review (.doc)
CMTV Tutorial (.doc)
Radiation Hybrid Mapping Exercise and Answers (.doc)
iMap Exercise (.ppt)

Gramene Exercises

BLAST (.doc)
cMap (.doc)
Mutants (.doc)
Ontologies and Ontology Supplemental Material (.doc)
Proteins (.doc)
QTLs (.doc)
Identification of Collinear Blocks Among Cereals (.doc)

MaizeGDB Exercises

Introduction (.ppt)
Maize Development (.doc)
Mutant Identification (.ppt)
Nearby Loci (.ppt)
New Mutants (.ppt) and answers to questions (.doc)
Sequence Analysis (.ppt)
Genome Surfing (.ppt)
Mutator Insertion (.doc)

Additional Documents

Basic Transmission Genetics Review (.doc)
MaizeGDB poster (.ppt)
Mapping Discussion Questions and Answers (.doc)
RFLPs 1.CNV and RFLPs 2.CNV (Canvas files; will not work unless you have the Canvas program)
References for Boston Lecture (.doc)
References for Walbot Lecture (.doc)

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